Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

acnB MCA_RS12190 MCA2485 WP_010961708.1: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:		 PaperBLAST

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

 75% id,
99% cov

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

 75% id,
99% cov

acnB / P56418: aconitase (EC 4.2.1.3) from Helicobacter pylori

 62% id,
99% cov

More...

leuC MCA_RS10110 MCA2065 WP_010961309.1: 3-isopropylmalate dehydratase large subunit
is similar to:		 PaperBLAST

D3GQL1: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

 29% id,
45% cov

D3GQL2: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

 30% id,
44% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

 30% id,
43% cov

More...

leuD MCA_RS10105 MCA2064 WP_010961308.1: 3-isopropylmalate dehydratase small subunit
is similar to:		 PaperBLAST

ACON_EMENI / C8VG90: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Emericella nidulans

 36% id,
13% cov

ACON_BOVIN / P20004: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus

 40% id,
11% cov

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

 34% id,
12% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2221606-2223075 (frame -2) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:		 PaperBLAST

ACOHC_MOUSE / P28271: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Mus musculus
P28271: aconitate hydratase (EC 4.2.1.3) from Mus musculus
Also see hits to annotated proteins above

 26% id,
52% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli
Also see hits to annotated proteins above

 27% id,
49% cov

ACO1_ARATH / Q42560: Aconitate hydratase 1; Aconitase 1; Citrate hydro-lyase 1; EC 4.2.1.3 from Arabidopsis thaliana

 30% id,
44% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory