Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 50 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

ilvA MCA_RS01745 MCA0354 WP_010959715.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

TD2_SOLLC / P25306: Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum

47% id,
84% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

38% id,
99% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

38% id,
95% cov

More...

thrC MCA_RS02960 MCA0596 WP_010959941.1: threonine synthase
is similar to:
PaperBLAST

SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
P20132: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

25% id,
91% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

25% id,
86% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

26% id,
67% cov

More...

cysM MCA_RS09325 MCA1899 WP_010961148.1: cysteine synthase CysM
is similar to:
PaperBLAST

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

22% id,
86% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

29% id,
41% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

28% id,
39% cov

cysK MCA_RS05005 MCA1022 WP_010960323.1: cysteine synthase A
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

22% id,
83% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

25% id,
62% cov

trpB MCA_RS12240 MCA2495 WP_041361308.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens

27% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory