Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylococcus capsulatus str. Bath (GCF_000008325.1)

Found 3 curated entries in PaperBLAST's database that match 'N-succinylcitrulline desuccinylase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Methylococcus capsulatus str. Bath, or try another query

argE MCA_RS10200 MCA2083 WP_010961326.1: acetylornithine deacetylase
is similar to:
PaperBLAST

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

25% id,
95% cov

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

27% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2242463-2243644 (frame +2) on NC_002977.6 Methylococcus capsulatus str. Bath, complete sequence
is similar to:
PaperBLAST

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron
Also see hits to annotated proteins above

26% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory