Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

MTH_RS05875 MTH1232 WP_010876856.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris

 45% id,
97% cov

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

 42% id,
97% cov

Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis

 40% id,
99% cov

More...

MTH_RS01930 MTH417 WP_010876056.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

F9VNG5: homoserine dehydrogenase (EC 1.1.1.3) from Sulfurisphaera tokodaii

 33% id,
99% cov

O58802: homoserine dehydrogenase (EC 1.1.1.3) from Pyrococcus horikoshii

 31% id,
97% cov

Q5SL04: homoserine dehydrogenase (EC 1.1.1.3) from Thermus thermophilus

 33% id,
91% cov

More...

MTH_RS03770 MTH802 WP_010876437.1: aspartate kinase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 30% id,
53% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 29% id,
44% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

 26% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1131613-1132926 (frame +1) on NC_000916.1 Methanothermobacter thermautotrophicus str. Delta H, complete sequence
is similar to:		 PaperBLAST

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

 45% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory