Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

serA MTH_RS04590 MTH970 WP_048061266.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

43% id,
96% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

40% id,
99% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

42% id,
95% cov

More...

ahcY MTH_RS07840 MTH1636 WP_010877244.1: adenosylhomocysteinase
is similar to:
PaperBLAST

SERA2_ARATH / O04130: D-3-phosphoglycerate dehydrogenase 2, chloroplastic; PGDH; EC 1.1.1.95 from Arabidopsis thaliana
O04130: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Arabidopsis thaliana

34% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

884507-886111 (frame +2) on NC_000916.1 Methanothermobacter thermautotrophicus str. Delta H, complete sequence
is similar to:
PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor
Also see hits to annotated proteins above

43% id,
97% cov

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

38% id,
100% cov

A0A1Z4EAX4: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Beta vulgaris
Also see hits to annotated proteins above

39% id,
88% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory