Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

glyA MTH_RS06600 MTH1380 WP_048061037.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

Q58992: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanocaldococcus jannaschii

65% id,
99% cov

Q9UWT5: glycine hydroxymethyltransferase (EC 2.1.2.1) from Saccharolobus solfataricus

46% id,
96% cov

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

39% id,
97% cov

More...

MTH_RS09190 MTH1914 WP_010877510.1: TIGR03576 family pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri
Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri

23% id,
75% cov

A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei

24% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory