Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 19 curated entries in PaperBLAST's database that match '4.3.2.1' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

argH MTH_RS01240 MTH269 WP_010875908.1: argininosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

42% id,
99% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

40% id,
98% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

38% id,
98% cov

More...

purB MTH_RS07350 MTH1537 WP_010877146.1: adenylosuccinate lyase
is similar to:
PaperBLAST

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

24% id,
78% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

25% id,
69% cov

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

25% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory