Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

MTH_RS06730 MTH1406 WP_143485782.1: class II aldolase/adducin family protein
is similar to:
PaperBLAST

ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli

33% id,
86% cov

ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli

33% id,
81% cov

C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum

32% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory