Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanothermobacter thermautotrophicus str. Delta H (GCF_000008645.1)

Found 4 curated entries in PaperBLAST's database that match '6.1.1.27' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Methanothermobacter thermautotrophicus str. Delta H, or try another query

sepS MTH_RS07170 MTH1501 WP_010877111.1: O-phosphoserine--tRNA ligase
is similar to:
PaperBLAST

SEPS_METJA / Q59054: O-phosphoserine--tRNA(Cys) ligase; O-phosphoserine--tRNA ligase; Non-canonical O-phosphoseryl-tRNA(Cys) synthetase; O-phosphoseryl-tRNA(Cys) synthetase; SepRS; EC 6.1.1.27 from Methanocaldococcus jannaschii
sepS / Q59054: O-phosphoseryl-tRNA ligase monomer (EC 6.1.1.27) from Methanocaldococcus jannaschii
Q59054: O-phospho-L-serine-tRNA ligase (EC 6.1.1.27) from Methanocaldococcus jannaschii

53% id,
99% cov

O30126: O-phospho-L-serine-tRNA ligase (EC 6.1.1.27) from Archaeoglobus fulgidus

49% id,
98% cov

MTH_RS03480 MTH742 WP_010876381.1: phenylalanine--tRNA ligase subunit alpha
is similar to:
PaperBLAST

SEPS_METJA / Q59054: O-phosphoserine--tRNA(Cys) ligase; O-phosphoserine--tRNA ligase; Non-canonical O-phosphoseryl-tRNA(Cys) synthetase; O-phosphoseryl-tRNA(Cys) synthetase; SepRS; EC 6.1.1.27 from Methanocaldococcus jannaschii
sepS / Q59054: O-phosphoseryl-tRNA ligase monomer (EC 6.1.1.27) from Methanocaldococcus jannaschii
Q59054: O-phospho-L-serine-tRNA ligase (EC 6.1.1.27) from Methanocaldococcus jannaschii

30% id,
37% cov

O30126: O-phospho-L-serine-tRNA ligase (EC 6.1.1.27) from Archaeoglobus fulgidus

27% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory