Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium acetobutylicum ATCC 824 (GCF_000008765.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Clostridium acetobutylicum ATCC 824, or try another query

CA_RS00100 CA_C0015 WP_010963344.1: NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 39% id,
97% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 40% id,
71% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 31% id,
92% cov

More...

CA_RS15150 CA_C2945 WP_010966228.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 37% id,
88% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 31% id,
93% cov

Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa

 33% id,
77% cov

More...

CA_RS00495 CA_C0089 WP_010963416.1: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 32% id,
97% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 31% id,
91% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 30% id,
86% cov

More...

CA_RS08055 CA_C1543 WP_010964851.1: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 32% id,
89% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 29% id,
79% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 28% id,
76% cov

More...

CA_RS02075 CA_C0365 WP_010963687.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 26% id,
95% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 29% id,
81% cov

U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii

 26% id,
64% cov

More...

CA_RS13880 CA_C2691 WP_010965979.1: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 28% id,
82% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 25% id,
86% cov

EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica
Q76KF5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Entamoeba histolytica

 26% id,
73% cov

More...

CA_RS13025 CA_C2542 WP_010965834.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 27% id,
14% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 28% id,
11% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 40% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory