Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Clostridium acetobutylicum ATCC 824 (GCF_000008765.1)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Clostridium acetobutylicum ATCC 824, or try another query

araA CA_RS07065 CA_C1342 WP_010964651.1: L-arabinose isomerase is similar to:	PaperBLAST
Q97JE4: L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum	100% id, 100% cov
Q97JE0: L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum	81% id, 100% cov
A0A1L2F0V9: L-arabinose isomerase (EC 5.3.1.4) from Enterococcus faecium	70% id, 100% cov
Q8EMP4: L-arabinose isomerase (EC 5.3.1.4) from Oceanobacillus iheyensis	70% id, 100% cov
A0A191W0D9: L-arabinose isomerase (EC 5.3.1.4) from Weizmannia coagulans	68% id, 100% cov
Q65J10: L-arabinose isomerase (EC 5.3.1.4) from Bacillus licheniformis	68% id, 100% cov
G1JRK8: L-arabinose isomerase (EC 5.3.1.4) from Pediococcus pentosaceus	60% id, 100% cov
Q88S84: L-arabinose isomerase (EC 5.3.1.4) from Lactiplantibacillus plantarum	59% id, 99% cov
ARAA_GEOSE / Q9S467: L-arabinose isomerase; EC 5.3.1.4 from Geobacillus stearothermophilus Q9S467: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus stearothermophilus	57% id, 98% cov
F6KRI7: L-arabinose isomerase (EC 5.3.1.4) from Anoxybacillus flavithermus	57% id, 98% cov
Q2VMT2: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus acidocaldarius	57% id, 98% cov
Q6W9D4: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus thermodenitrificans	57% id, 98% cov
Q5KYP7: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus kaustophilus	57% id, 98% cov
D9ILD9: L-arabinose isomerase (EC 5.3.1.4) from Limosilactobacillus fermentum	55% id, 100% cov
Q9KBQ2: L-arabinose isomerase (EC 5.3.1.4) from Alkalihalobacillus halodurans	57% id, 96% cov
ARAA_BACSU / P94523: L-arabinose isomerase; EC 5.3.1.4 from Bacillus subtilis P94523: L-arabinose isomerase (EC 5.3.1.4) from Bacillus subtilis	54% id, 98% cov
Q6VAK6: L-arabinose isomerase (EC 5.3.1.4) from Parageobacillus thermoglucosidasius	53% id, 98% cov
J9E728: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus hesperidum	53% id, 97% cov
Echvi_1879: L-arabinose isomerase (EC 5.3.1.4) from Echinicola vietnamensis	52% id, 97% cov
C0C0X3: L-arabinose isomerase (EC 5.3.1.4) from [Clostridium] hylemonae	52% id, 98% cov
CA265_RS08615: L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp.	51% id, 98% cov
Q9WYB3: L-arabinose isomerase (EC 5.3.1.4) from Thermotoga maritima	51% id, 97% cov
P58540: L-arabinose isomerase (EC 5.3.1.4) from Yersinia pestis	51% id, 96% cov
P06189: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica	50% id, 95% cov
ARAA_ECOLI / P08202: L-arabinose isomerase; EC 5.3.1.4 from Escherichia coli AraA / b0062: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli araA / P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
P58538: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
P58539: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica	50% id, 95% cov
Q8FL89: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
Q7UDT4: L-arabinose isomerase (EC 5.3.1.4) from Shigella flexneri	50% id, 95% cov
H6UGW9: L-arabinose isomerase (EC 5.3.1.4) from Arthrobacter sp.	47% id, 96% cov
A0LT86: L-arabinose isomerase (EC 5.3.1.4) from Acidothermus cellulolyticus	47% id, 96% cov
Shewana3_2066: L-arabinose isomerase (EC 5.3.1.4) from Shewanella sp.	47% id, 96% cov
Q8G7J3: L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum I3ZR32: L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum	47% id, 95% cov
Q8AAW1: L-arabinose isomerase (EC 5.3.1.4) from Bacteroides thetaiotaomicron	46% id, 96% cov
Q70G56: L-arabinose isomerase (EC 5.3.1.4) from Thermoanaerobacter mathranii	27% id, 95% cov
More...

araA CA_RS07085 CA_C1346 WP_010964655.1: L-arabinose isomerase is similar to:	PaperBLAST
Q97JE0: L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum	100% id, 100% cov
Q97JE4: L-arabinose isomerase (EC 5.3.1.4) from Clostridium acetobutylicum	81% id, 100% cov
Q65J10: L-arabinose isomerase (EC 5.3.1.4) from Bacillus licheniformis	69% id, 100% cov
A0A1L2F0V9: L-arabinose isomerase (EC 5.3.1.4) from Enterococcus faecium	69% id, 100% cov
Q8EMP4: L-arabinose isomerase (EC 5.3.1.4) from Oceanobacillus iheyensis	67% id, 100% cov
A0A191W0D9: L-arabinose isomerase (EC 5.3.1.4) from Weizmannia coagulans	65% id, 100% cov
Q88S84: L-arabinose isomerase (EC 5.3.1.4) from Lactiplantibacillus plantarum	59% id, 100% cov
G1JRK8: L-arabinose isomerase (EC 5.3.1.4) from Pediococcus pentosaceus	58% id, 100% cov
F6KRI7: L-arabinose isomerase (EC 5.3.1.4) from Anoxybacillus flavithermus	57% id, 97% cov
ARAA_GEOSE / Q9S467: L-arabinose isomerase; EC 5.3.1.4 from Geobacillus stearothermophilus Q9S467: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus stearothermophilus	57% id, 97% cov
Q2VMT2: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus acidocaldarius	56% id, 96% cov
Q9KBQ2: L-arabinose isomerase (EC 5.3.1.4) from Alkalihalobacillus halodurans	56% id, 97% cov
Q6W9D4: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus thermodenitrificans	56% id, 96% cov
Q5KYP7: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus kaustophilus	56% id, 97% cov
ARAA_BACSU / P94523: L-arabinose isomerase; EC 5.3.1.4 from Bacillus subtilis P94523: L-arabinose isomerase (EC 5.3.1.4) from Bacillus subtilis	56% id, 97% cov
D9ILD9: L-arabinose isomerase (EC 5.3.1.4) from Limosilactobacillus fermentum	54% id, 100% cov
Q6VAK6: L-arabinose isomerase (EC 5.3.1.4) from Parageobacillus thermoglucosidasius	55% id, 97% cov
Echvi_1879: L-arabinose isomerase (EC 5.3.1.4) from Echinicola vietnamensis	53% id, 97% cov
J9E728: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus hesperidum	52% id, 95% cov
CA265_RS08615: L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp.	51% id, 98% cov
C0C0X3: L-arabinose isomerase (EC 5.3.1.4) from [Clostridium] hylemonae	51% id, 97% cov
Q9WYB3: L-arabinose isomerase (EC 5.3.1.4) from Thermotoga maritima	51% id, 97% cov
P58540: L-arabinose isomerase (EC 5.3.1.4) from Yersinia pestis	51% id, 96% cov
P06189: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica	51% id, 95% cov
P58539: L-arabinose isomerase (EC 5.3.1.4) from Salmonella enterica	50% id, 95% cov
ARAA_ECOLI / P08202: L-arabinose isomerase; EC 5.3.1.4 from Escherichia coli AraA / b0062: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli araA / P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli P08202: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
Q8FL89: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
P58538: L-arabinose isomerase (EC 5.3.1.4) from Escherichia coli	50% id, 95% cov
Q7UDT4: L-arabinose isomerase (EC 5.3.1.4) from Shigella flexneri	50% id, 95% cov
Shewana3_2066: L-arabinose isomerase (EC 5.3.1.4) from Shewanella sp.	48% id, 96% cov
H6UGW9: L-arabinose isomerase (EC 5.3.1.4) from Arthrobacter sp.	46% id, 96% cov
Q8G7J3: L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum I3ZR32: L-arabinose isomerase (EC 5.3.1.4) from Bifidobacterium longum	45% id, 97% cov
A0LT86: L-arabinose isomerase (EC 5.3.1.4) from Acidothermus cellulolyticus	45% id, 97% cov
Q8AAW1: L-arabinose isomerase (EC 5.3.1.4) from Bacteroides thetaiotaomicron	46% id, 95% cov
Q70G56: L-arabinose isomerase (EC 5.3.1.4) from Thermoanaerobacter mathranii	29% id, 95% cov
More...

hxlB CA_RS02230 CA_C0397 WP_010963719.1: 6-phospho-3-hexuloisomerase is similar to:	PaperBLAST
Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis	37% id, 28% cov

CA_RS05215 CA_C0979 WP_010964297.1: CBS domain-containing protein is similar to:	PaperBLAST
Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis	27% id, 37% cov

glmS CA_RS00910 CA_C0158 WP_010963484.1: glutamine--fructose-6-phosphate transaminase (isomerizing) is similar to:	PaperBLAST
Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis	36% id, 15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory