Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium johnstonii 3841 (GCF_000009265.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.3.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhizobium johnstonii 3841, or try another query

RL_RS18435 RL3578 WP_011653049.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

40% id,
99% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

37% id,
93% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

32% id,
91% cov

More...

RL_RS02310 RL0444 WP_011650233.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

40% id,
96% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

37% id,
92% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

27% id,
94% cov

More...

RL_RS10730 RL2067 WP_011651675.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

38% id,
97% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

26% id,
89% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

45% id,
40% cov

More...

RL_RS32560 pRL110555 WP_003548137.1: FMN-binding glutamate synthase family protein
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

27% id,
72% cov

A9QH69: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); L-lactate oxidase (EC 1.1.3.2) from Streptococcus iniae

26% id,
63% cov

O33655: L-lactate oxidase (EC 1.1.3.2) from Streptococcus iniae

26% id,
61% cov

More...

guaB RL_RS04430 RL0847 WP_011650594.1: IMP dehydrogenase
is similar to:
PaperBLAST

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

22% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory