Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium johnstonii 3841 (GCF_000009265.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Rhizobium johnstonii 3841, or try another query

RL_RS24285 RL4720 WP_011654049.1: NAD-glutamate dehydrogenase
is similar to:		 PaperBLAST

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

 44% id,
94% cov

A0A0H3C571: glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides

 42% id,
97% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

 39% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

58971-59543 (frame -1) on NC_008381.1 Rhizobium johnstonii 3841 plasmid pRL10, complete sequence
is similar to:		 PaperBLAST

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

 51% id,
30% cov

Q43314: glutamate dehydrogenase (EC 1.4.1.2); glutamate dehydrogenase [NAD(P)+] (EC 1.4.1.3) from Arabidopsis thaliana

 50% id,
30% cov

DHE2_PEPAS / P28997: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Peptoniphilus asaccharolyticus
gdhA / P28997: NAD-glutamate dehydrogenase subunit (EC 1.4.1.2) from Peptoniphilus asaccharolyticus
P28997: glutamate dehydrogenase (EC 1.4.1.2) from Peptoniphilus asaccharolyticus

 47% id,
31% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory