Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium johnstonii 3841 (GCF_000009265.1)

Found 4 curated entries in PaperBLAST's database that match '2.2.1.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizobium johnstonii 3841, or try another query

RL_RS33070 pRL120027 WP_003562561.1: class I fructose-bisphosphate aldolase
is similar to:
PaperBLAST

ADHS_METJA / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; Transaldolase-like ADHS; EC 2.2.1.10 from Methanocaldococcus jannaschii
aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii
Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10) from Methanocaldococcus jannaschii

35% id,
95% cov

ADHS_METMP / Q6LZE3: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; EC 2.2.1.10 from Methanococcus maripaludis

34% id,
95% cov

RL_RS03405 RL0646 WP_011650423.1: aldolase
is similar to:
PaperBLAST

ADHS_METJA / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; Transaldolase-like ADHS; EC 2.2.1.10 from Methanocaldococcus jannaschii
aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii
Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10) from Methanocaldococcus jannaschii

31% id,
95% cov

ADHS_METMP / Q6LZE3: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; EC 2.2.1.10 from Methanococcus maripaludis

29% id,
95% cov

RL_RS36720 pRL120762 WP_041937036.1: class I fructose-bisphosphate aldolase
is similar to:
PaperBLAST

ADHS_METJA / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; Transaldolase-like ADHS; EC 2.2.1.10 from Methanocaldococcus jannaschii
aroA' / Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase monomer (EC 4.1.2.13; EC 2.2.1.10) from Methanocaldococcus jannaschii
Q57843: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase (EC 2.2.1.10) from Methanocaldococcus jannaschii

30% id,
93% cov

ADHS_METMP / Q6LZE3: 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase; ADH synthase; ADHS; ADTH synthase; EC 2.2.1.10 from Methanococcus maripaludis

26% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory