Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.1.18' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS00695 amb0138 WP_011382585.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

MI2D_RHIME / O68965: Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti
SM_b20899: Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
O68965: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti

28% id,
97% cov

Q9EZV8: inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii

27% id,
97% cov

HSERO_RS12095: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Herbaspirillum seropedicae

28% id,
75% cov

More...

AMB_RS00205 amb0040 WP_011382487.1: bi-domain-containing oxidoreductase
is similar to:
PaperBLAST

IOLG_THEMA / Q9WYP5: Myo-inositol 2-dehydrogenase; EC 1.1.1.18 from Thermotoga maritima
iolG / Q9WYP5: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Thermotoga maritima

26% id,
99% cov

AO353_21365: Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas fluorescens

21% id,
97% cov

E1U887: inositol 2-dehydrogenase (EC 1.1.1.18) from Lacticaseibacillus casei

26% id,
66% cov

More...

AMB_RS00635 amb0126 WP_011382573.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

E1U888: inositol 2-dehydrogenase (EC 1.1.1.18) from Lacticaseibacillus casei

26% id,
92% cov

Q5KYQ3: inositol 2-dehydrogenase (EC 1.1.1.18) from Geobacillus kaustophilus

22% id,
96% cov

iolG / A0A0H3FQ94: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Klebsiella aerogenes

29% id,
55% cov

More...

AMB_RS00665 amb0132 WP_011382579.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

E1U888: inositol 2-dehydrogenase (EC 1.1.1.18) from Lacticaseibacillus casei

26% id,
74% cov

AMB_RS01295 amb0255 WP_011382702.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

IOLG_THEMA / Q9WYP5: Myo-inositol 2-dehydrogenase; EC 1.1.1.18 from Thermotoga maritima
iolG / Q9WYP5: myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Thermotoga maritima

26% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

151817-153421 (frame +2) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

E1U888: inositol 2-dehydrogenase (EC 1.1.1.18) from Lacticaseibacillus casei
Also see hits to annotated proteins above

25% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory