Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS19890 amb3931 WP_043745351.1: complex I NDUFA9 subunit family protein
is similar to:
PaperBLAST

D6Y7Y8: uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora

34% id,
54% cov

AMB_RS00320 amb0063 WP_043742990.1: SDR family oxidoreductase
is similar to:
PaperBLAST

URODH_AGRFC / Q7CRQ0: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum
udh / Q7CRQ0: D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum
Q7CRQ0: uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens

29% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory