Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.283' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS01300 amb0256 WP_011382703.1: aldo/keto reductase
is similar to:
PaperBLAST

GR_BACSU / O32210: Glyoxal reductase; GR; Methylglyoxal reductase; EC 1.1.1.-; EC 1.1.1.283 from Bacillus subtilis
yvgN / O32210: glyoxal/methylglyoxal reductase (EC 1.1.1.283; EC 1.1.1.91) from Bacillus subtilis

26% id,
64% cov

AMB_RS00195 amb0038 WP_011382485.1: nucleoside-diphosphate sugar epimerase
is similar to:
PaperBLAST

A0A0E4AY21: carbonyl reductase (NADPH) (EC 1.1.1.184); methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Kluyveromyces marxianus

25% id,
58% cov

AMB_RS00295 amb0058 WP_011382505.1: dTDP-glucose 4,6-dehydratase
is similar to:
PaperBLAST

A0A1D8NEA1: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Yarrowia lipolytica

27% id,
49% cov

AMB_RS12345 amb2456 WP_011384837.1: aldo/keto reductase
is similar to:
PaperBLAST

C4R5F8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Komagataella phaffii

26% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory