Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 3 curated entries in PaperBLAST's database that match '1.1.1.312' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS01295 amb0255 WP_011382702.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

75% id,
99% cov

LIGC_SPHSK / Q9KWL3: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp.
ligC / Q9KWL3: LigC (EC 1.1.1.312) from Sphingobium sp.

72% id,
99% cov

AMB_RS00695 amb0138 WP_011382585.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

29% id,
80% cov

LIGC_SPHSK / Q9KWL3: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp.
ligC / Q9KWL3: LigC (EC 1.1.1.312) from Sphingobium sp.

29% id,
68% cov

AMB_RS00205 amb0040 WP_011382487.1: threonine dehydrogenase
is similar to:
PaperBLAST

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

25% id,
72% cov

AMB_RS00635 amb0126 WP_011382573.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

LIGC_SPHSK / Q9KWL3: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp.
ligC / Q9KWL3: LigC (EC 1.1.1.312) from Sphingobium sp.

27% id,
63% cov

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

27% id,
61% cov

AMB_RS00660 amb0131 WP_011382578.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

25% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory