Curated BLAST for Genomes


Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 8 curated entries in PaperBLAST's database that match ''.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS18155 amb3587 WP_011385945.1: 3-hydroxyisobutyrate dehydrogenase
is similar to:

6PGD_HALVD / D4GST8: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC from Haloferax volcanii
D4GST8: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC from Haloferax volcanii

29% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory