Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 3 curated entries in PaperBLAST's database that match '1.1.1.368' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

had AMB_RS10835 amb2144 WP_043744206.1: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

65% id,
96% cov

AMB_RS00205 amb0040 WP_011382487.1: bi-domain-containing oxidoreductase
is similar to:
PaperBLAST

HAD_THAAR / O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; EC 1.1.1.368 from Thauera aromatica
had / O87871: 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase subunit (EC 1.1.1.368) from Thauera aromatica
O87871: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.1.1.368) from Thauera aromatica

34% id,
32% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory