Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 6 curated entries in PaperBLAST's database that match '1.1.1.376'.

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS00695 amb0138 WP_011382585.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

27% id,
72% cov

AMB_RS00635 amb0126 WP_011382573.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

28% id,
63% cov

AMB_RS01295 amb0255 WP_011382702.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

31% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory