Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS03135 amb0607 WP_043743299.1: NADP-dependent isocitrate dehydrogenase is similar to:	PaperBLAST
IDH_AZOVI / P16100: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Azotobacter vinelandii icd / P16100: isocitrate dehydrogenase (NADP-dependent) (EC 1.1.1.42) from Azotobacter vinelandii	75% id, 100% cov
idh / Q8L0X8: isocitrate dehydrogenase (EC 1.1.1.42) from Chlorobium limicola	73% id, 100% cov
A0A0E3SSZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methanococcoides methylutens	67% id, 99% cov
Q1XIQ9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	66% id, 100% cov
B2ZAA4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Streptomyces lividans	64% id, 100% cov
IDH_CORGL / P50216: Isocitrate dehydrogenase [NADP]; IDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Corynebacterium glutamicum P50216: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Corynebacterium glutamicum	64% id, 100% cov
V5VCI0: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Acinetobacter baumannii	63% id, 99% cov
O53611: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	62% id, 99% cov
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AMB_RS03140 amb0608 WP_011383051.1: NADP-dependent isocitrate dehydrogenase is similar to:	PaperBLAST
B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum	72% id, 100% cov
icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	72% id, 99% cov
ICDHC_ARATH / Q9SRZ6: Cytosolic isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana cICDH / Q9SRZ6: NADP+-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Arabidopsis thaliana Q9SRZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	69% id, 99% cov
Q6C2Y4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Yarrowia lipolytica	69% id, 98% cov
A0AR16: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pinus pinaster	69% id, 98% cov
Q4E4L7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	69% id, 98% cov
IDHP_PIG / P33198: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Sus scrofa	69% id, 97% cov
J9Q6L4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	68% id, 98% cov
IDHC_SOYBN / Q06197: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Glycine max	67% id, 99% cov
Q6R6M7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pisum sativum	67% id, 99% cov
IDHC_HUMAN / O75874: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH1 / O75874: cytosolic NADP(+)-dependent isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens O75874: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	66% id, 100% cov
IDHC_RAT / P41562: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P41562: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	68% id, 97% cov
IDHC_MOUSE / O88844: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus O88844: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	68% id, 97% cov
A0A4X1UZU9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Sus scrofa	67% id, 97% cov
IDHC_BOVIN / Q9XSG3: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bos taurus	67% id, 97% cov
ICDHX_ARATH / Q9SLK0: Peroxisomal isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana Q9SLK0: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	67% id, 98% cov
IDHC_YEAST / P41939: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Saccharomyces cerevisiae IDP2 / P41939: NADP-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Saccharomyces cerevisiae P41939: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	64% id, 100% cov
P21954: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	65% id, 95% cov
IDHP_MOUSE / P54071: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus P54071: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	69% id, 90% cov
IDHP_HUMAN / P48735: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH2 / P48735: mitochondrial isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens P48735: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	69% id, 90% cov
IDHP_RAT / P56574: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P56574: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	68% id, 90% cov
A0A2G2Y555: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	68% id, 86% cov
IDHP_SCHPO / O14254: Probable isocitrate dehydrogenase [NADP], mitochondrial; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Schizosaccharomyces pombe	63% id, 92% cov
Q4DG65: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	61% id, 93% cov
O65853: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Nicotiana tabacum	66% id, 85% cov
idpA: mitochondrial NADP-dependent isocitrate dehydrogenase; EC 1.1.1.42 from Emericella nidulans	68% id, 83% cov
ICDHP_ARATH / Q8LPJ5: Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial; EC 1.1.1.42 from Arabidopsis thaliana	67% id, 84% cov
Q6AQ66: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Desulfotalea psychrophila	51% id, 99% cov
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AMB_RS16020 amb3176 WP_011385541.1: tartrate dehydrogenase is similar to:	PaperBLAST
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	31% id, 87% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	29% id, 92% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	29% id, 89% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	27% id, 92% cov
Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea	27% id, 90% cov
IDH_PSEAB / Q02NB5: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Pseudomonas aeruginosa	29% id, 85% cov
IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli	29% id, 85% cov
D0Z8Y6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Edwardsiella tarda	28% id, 86% cov
icd / B2ZP83: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Helicobacter pylori	28% id, 85% cov
IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii	28% id, 83% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	34% id, 67% cov
IDH_BACSU / P39126: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bacillus subtilis icd / GB\|CAB14873.1: isocitrate dehydrogenase; EC 1.1.1.42 from Bacillus subtilis	31% id, 29% cov
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leuB AMB_RS20570 amb4069 WP_011386420.1: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	27% id, 93% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	27% id, 92% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	28% id, 88% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	26% id, 94% cov
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	26% id, 92% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	34% id, 68% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	24% id, 90% cov
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The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4469392-4470561 (frame +1) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence is similar to:	PaperBLAST
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus Also see hits to annotated proteins above	27% id, 97% cov
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	29% id, 35% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory