Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.43' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS00985 amb0195 WP_043743064.1: D-glycerate dehydrogenase
is similar to:
PaperBLAST

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

39% id,
97% cov

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

38% id,
95% cov

AMB_RS00685 amb0136 WP_011382583.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

34% id,
91% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

34% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory