Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS13020 amb2587 WP_173361894.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 33% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 33% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 32% id,
91% cov

More...

AMB_RS00675 amb0134 WP_011382581.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 33% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
91% cov

More...

AMB_RS13470 amb2677 WP_011385057.1: 3-hydroxybutyrate dehydrogenase
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 33% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 33% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 32% id,
91% cov

More...

AMB_RS04485 amb0880 WP_011383322.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

 31% id,
96% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 31% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 31% id,
92% cov

More...

AMB_RS13035 amb2590 WP_011384971.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 32% id,
93% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 31% id,
93% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 31% id,
93% cov

More...

AMB_RS19245 amb3801 WP_011386155.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 31% id,
92% cov

fabG AMB_RS10625 amb2106 WP_011384506.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 31% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
92% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

 29% id,
94% cov

More...

phbB AMB_RS04300 amb0843 WP_043743408.1: acetoacetyl-CoA reductase
is similar to:		 PaperBLAST

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

 32% id,
87% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 31% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
92% cov

More...

AMB_RS18130 amb3582 WP_011385940.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 31% id,
89% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
89% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 29% id,
89% cov

More...

AMB_RS10870 amb2150 WP_011384549.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 30% id,
91% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

 28% id,
97% cov

More...

AMB_RS08070 amb1599 WP_011384008.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 30% id,
91% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 29% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 29% id,
91% cov

More...

AMB_RS01425 amb0281 WP_011382728.1: bifunctional aldolase/short-chain dehydrogenase
is similar to:		 PaperBLAST

Ac3H11_614: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp.

 29% id,
91% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 28% id,
91% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

 30% id,
80% cov

AMB_RS00455 amb0090 WP_011382537.1: oxidoreductase
is similar to:		 PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 28% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 28% id,
92% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 28% id,
92% cov

More...

AMB_RS19395 amb3831 WP_011386185.1: SDR family oxidoreductase
is similar to:		 PaperBLAST

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 29% id,
85% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

 26% id,
70% cov

AMB_RS00635 amb0126 WP_011382573.1: Gfo/Idh/MocA family oxidoreductase
is similar to:		 PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

 24% id,
96% cov

AMB_RS12070 amb2390 WP_011384786.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 33% id,
67% cov

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

 31% id,
70% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

 30% id,
68% cov

AMB_RS03820 amb0744 WP_011383187.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 26% id,
72% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

 26% id,
68% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

 26% id,
68% cov

More...

AMB_RS01295 amb0255 WP_011382702.1: Gfo/Idh/MocA family oxidoreductase
is similar to:		 PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

 30% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2773323-2774105 (frame -2) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:		 PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 33% id,
97% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 32% id,
97% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 32% id,
97% cov

More...

2776192-2777016 (frame -1) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:		 PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 32% id,
98% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 31% id,
98% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 31% id,
98% cov

More...

1725491-1726954 (frame +2) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:		 PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 29% id,
96% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 29% id,
96% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 29% id,
96% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory