Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.71'.

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS10540 amb2088 WP_011384488.1: KR domain-containing protein
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

31% id,
97% cov

AMB_RS10625 amb2106 WP_011384506.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

30% id,
88% cov

AMB_RS10835 amb2144 WP_043744206.1: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q9HMB6: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Halobacterium sp.

26% id,
96% cov

Q5V676: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Haloarcula marismortui

27% id,
82% cov

AMB_RS04485 amb0880 WP_011383322.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

31% id,
80% cov

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

25% id,
78% cov

AMB_RS14310 amb2842 WP_011385219.1: KR domain-containing protein
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

28% id,
88% cov

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

29% id,
32% cov

AMB_RS08070 amb1599 WP_011384008.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

26% id,
89% cov

AMB_RS19245 amb3801 WP_011386155.1: short chain dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

25% id,
92% cov

AMB_RS01425 amb0281 WP_011382728.1: bifunctional aldolase/short-chain dehydrogenase
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

29% id,
71% cov

AMB_RS03820 amb0744 WP_011383187.1: KR domain-containing protein
is similar to:
PaperBLAST

C6A190: alcohol dehydrogenase (NADP+) (EC 1.1.1.2); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Thermococcus sibiricus

26% id,
77% cov

Q9HBH5: NADP-retinol dehydrogenase (EC 1.1.1.300); alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Homo sapiens

26% id,
66% cov

AMB_RS01565 amb0309 WP_011382756.1: crotonyl-CoA carboxylase/reductase
is similar to:
PaperBLAST

Q8H0L8: alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71) from Solanum tuberosum

28% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory