Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3'.

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS20890 amb4130 WP_011386479.1: LutB/LldF family L-lactate oxidation iron-sulfur protein
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

38% id,
98% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

27% id,
93% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

39% id,
63% cov

AMB_RS22540 amb4454 WP_011386798.1: alpha-hydroxy acid oxidase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

38% id,
98% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

38% id,
92% cov

Q9I197: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

37% id,
94% cov

More...

AMB_RS20885 amb4129 WP_043745482.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

35% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

34% id,
35% cov

AMB_RS20895 amb4131 WP_011386480.1: lactate utilization protein
is similar to:
PaperBLAST

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

38% id,
57% cov

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

56% id,
17% cov

rsxC AMB_RS13160 amb2615 WP_011384996.1: electron transport complex subunit RsxC
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

31% id,
17% cov

AMB_RS08145 amb1613 WP_011384022.1: nitronate monooxygenase
is similar to:
PaperBLAST

CYB2_YEAST / P00175: L-lactate dehydrogenase (cytochrome); Cytochrome b2; Flavocytochrome b2; FCB2; L-lactate ferricytochrome c oxidoreductase; L-LCR; EC 1.1.2.3 from Saccharomyces cerevisiae
CYB2 / P00175: L-lactate dehydrogenase subunit (EC 1.1.2.3) from Saccharomyces cerevisiae
P00175: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Saccharomyces cerevisiae

31% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory