Curated BLAST for Genomes


Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 9 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS22540 amb4454 WP_011386798.1: alpha-hydroxy-acid oxidizing protein
is similar to:

lldD: L-lactate dehydrogenase [cytochrome]; EC from Escherichia coli

38% id,
92% cov

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC from Pseudomonas simiae

34% id,
99% cov

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC from Sinorhizobium meliloti

34% id,
97% cov


AMB_RS08145 amb1613 WP_050750667.1: 2-nitropropane dioxygenase
is similar to:

CYB2_YEAST / P00175: L-lactate dehydrogenase (cytochrome); Cytochrome b2; Flavocytochrome b2; FCB2; L-lactate ferricytochrome c oxidoreductase; L-LCR; EC from Saccharomyces cerevisiae
CYB2 / P00175: L-lactate dehydrogenase subunit (EC from Saccharomyces cerevisiae
P00175: L-lactate dehydrogenase (cytochrome) (EC from Saccharomyces cerevisiae

31% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory