Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 24 curated entries in PaperBLAST's database that match '1.1.3.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS22540 amb4454 WP_011386798.1: alpha-hydroxy-acid oxidizing protein
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

35% id,
99% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

34% id,
91% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

36% id,
46% cov

More...

AMB_RS19325 amb3817 WP_011386171.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

26% id,
95% cov

AMB_RS13120 amb2607 WP_043744513.1: nitronate monooxygenase
is similar to:
PaperBLAST

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

31% id,
36% cov

AMB_RS08145 amb1613 WP_050750667.1: 2-nitropropane dioxygenase
is similar to:
PaperBLAST

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

33% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory