Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.99.2'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS19325 amb3817 WP_011386171.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

60% id,
96% cov

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

56% id,
96% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

47% id,
84% cov

More...

AMB_RS00635 amb0126 WP_011382573.1: gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis

24% id,
78% cov

AMB_RS14080 amb2799 WP_011385177.1: D-amino-acid dehydrogenase
is similar to:
PaperBLAST

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

37% id,
15% cov

AMB_RS22450 amb4437 WP_011386781.1: electron transfer flavoprotein-ubiquinone oxidoreductase
is similar to:
PaperBLAST

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus

43% id,
11% cov

AMB_RS05400 amb1056 WP_043746072.1: fumarate reductase/succinate dehydrogenase flavoprotein subunit
is similar to:
PaperBLAST

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus

32% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

145234-146319 (frame +1) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

gfo / Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Q07982: glucose-fructose oxidoreductase (EC 1.1.99.28) from Zymomonas mobilis
Also see hits to annotated proteins above

24% id,
83% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory