Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 160 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 123 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS01310 amb0258 WP_011382705.1: protocatechuate 3,4-dioxygenase subunit beta
is similar to:
PaperBLAST

PmdB / Q8RNX9: protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni

44% id,
100% cov

desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis
Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis
G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.

43% id,
66% cov

GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida
gllA / Q88JX5: gallate dioxygenase monomer (EC 1.13.11.57) from Pseudomonas putida

37% id,
58% cov

AMB_RS01305 amb0257 WP_011382704.1: protocatechuate 4,5-dioxygenase subunit alpha
is similar to:
PaperBLAST

PmdA / Q8RNY0: protocatechuate 4,5-dioxygenase α subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni

39% id,
73% cov

desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis
Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis
G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.

26% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory