Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 15 curated entries in PaperBLAST's database that match '1.2.1.16'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

gabD AMB_RS06710 amb1321 WP_011383730.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

68% id,
100% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

67% id,
100% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

67% id,
100% cov

More...

gabD AMB_RS04160 amb0814 WP_011383257.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

63% id,
99% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

61% id,
99% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

61% id,
99% cov

More...

AMB_RS04115 amb0805 WP_011383248.1: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
is similar to:
PaperBLAST

SO1275: succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] from Shewanella oneidensis

40% id,
97% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

40% id,
97% cov

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

39% id,
97% cov

More...

AMB_RS13050 amb2593 WP_011384974.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

AO353_11505: succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

39% id,
96% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

38% id,
96% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

38% id,
96% cov

More...

AMB_RS18195 amb3595 WP_011385953.1: DUF1487 domain-containing protein
is similar to:
PaperBLAST

UGA2 / P38067: NAD(P)-dependent succinate semialdehyde dehydrogenase (EC 1.2.1.16) from Saccharomyces cerevisiae

36% id,
94% cov

P94428: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Bacillus subtilis

34% id,
99% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

34% id,
96% cov

More...

AMB_RS12610 amb2507 WP_011384888.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

gabD1 / Q0K2K1: NAD(P)+-dependent succinate semialdehyde dehydrogenase monomer (EC 1.2.1.16) from Cupriavidus necator
Q0K2K1: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) from Cupriavidus necator

32% id,
97% cov

GB|AAC75708.1: succinate-semialdehyde dehydrogenase [NAD(P)+]; EC 1.2.1.16 from Escherichia coli

30% id,
98% cov

gabD / Q4KKA2: NAD(P)-dependent succinate-semialdehyde dehydrogenase (EC 1.2.1.16) from Pseudomonas fluorescens

30% id,
98% cov

More...

AMB_RS00880 amb0173 WP_011382620.1: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase
is similar to:
PaperBLAST

Q976X5: succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16); aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5) from Sulfurisphaera tokodaii

24% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory