Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 19 curated entries in PaperBLAST's database that match '1.3.8.5'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS18215 amb3599 WP_011385957.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

71% id,
100% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

71% id,
100% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

71% id,
100% cov

More...

AMB_RS03480 amb0677 WP_011383120.1: isovaleryl-CoA dehydrogenase
is similar to:
PaperBLAST

MBCD_SOLTU / Q9FS88: 2-methylacyl-CoA dehydrogenase, mitochondrial; 2-methylbutanoyl-CoA dehydrogenase; 2-methylbutyryl-CoA dehydrogenase; 2MBCD; Isovaleryl-CoA dehydrogenase 1; St-IVD1; EC 1.3.8.5 from Solanum tuberosum

65% id,
94% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

38% id,
99% cov

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

38% id,
99% cov

More...

AMB_RS18150 amb3586 WP_043745120.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

60% id,
98% cov

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

44% id,
99% cov

AO353_25680: 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) from Pseudomonas fluorescens

44% id,
99% cov

More...

AMB_RS13080 amb2599 WP_011384980.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

44% id,
98% cov

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

43% id,
99% cov

PS417_13850: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

43% id,
100% cov

More...

AMB_RS01560 amb0308 WP_011382755.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Pf6N2E2_1146: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

36% id,
100% cov

AO353_25670: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

37% id,
97% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

37% id,
98% cov

More...

AMB_RS13025 amb2588 WP_011384969.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

35% id,
97% cov

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

35% id,
98% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

34% id,
97% cov

More...

AMB_RS16315 amb3231 WP_011385596.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

AO356_26355: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

33% id,
99% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

33% id,
99% cov

PS417_13840: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas simiae

32% id,
100% cov

More...

AMB_RS10220 amb2024 WP_011384427.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

Ac3H11_2996: 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) from Acidovorax sp.

36% id,
89% cov

Psest_2445: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

36% id,
89% cov

SO1679: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Shewanella oneidensis

36% id,
89% cov

More...

AMB_RS13255 amb2634 WP_011385014.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

PfGW456L13_2985: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

30% id,
95% cov

Psest_2440: isobutyryl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas stutzeri

30% id,
92% cov

PfGW456L13_2983: 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) from Pseudomonas fluorescens

31% id,
88% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory