Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 119 curated entries in PaperBLAST's database that match '1.5.1.2'.

These curated entries have 99 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

metF AMB_RS02230 WP_043743215.1: methylenetetrahydrofolate reductase
is similar to:
PaperBLAST

Q6N3J2: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Rhodopseudomonas palustris

60% id,
95% cov

Q89UJ7: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Bradyrhizobium japonicum

59% id,
95% cov

Q9A6F4: methylenetetrahydrofolate reductase [NAD(P)H] (EC 1.5.1.20) from Caulobacter vibrioides

58% id,
96% cov

More...

proC AMB_RS02820 amb0545 WP_011382988.1: pyrroline-5-carboxylate reductase
is similar to:
PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

43% id,
100% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

39% id,
97% cov

O87725: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Acetoanaerobium sticklandii

35% id,
99% cov

More...

ald AMB_RS22705 amb4487 WP_043745685.1: alanine dehydrogenase
is similar to:
PaperBLAST

CEO2_LACLL / P15244: N(5)-(carboxyethyl)ornithine synthase; CEOS; N(5)-(L-1-carboxyethyl)-L-ornithine:NADP(+) oxidoreductase; EC 1.5.1.24 from Lactococcus lactis
ceo / GB|AAA86385.1: N(5)-(carboxyethyl)ornithine synthase; EC 1.5.1.24 from Lactococcus lactis

25% id,
93% cov

metH AMB_RS02225 amb0429 WP_043743213.1: methionine synthase
is similar to:
PaperBLAST

YITJ_BACSU / O06745: Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; EC 2.1.1.10; EC 1.5.1.20 from Bacillus subtilis

31% id,
46% cov

panE AMB_RS10015 amb1986 WP_011384389.1: 2-dehydropantoate 2-reductase
is similar to:
PaperBLAST

DvMF_3161: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Desulfovibrio vulgaris

31% id,
32% cov

AMB_RS20090 amb3970 WP_011386324.1: cache domain-containing protein
is similar to:
PaperBLAST

P5CR3_BACSU / Q00777: Pyrroline-5-carboxylate reductase 3; P5C reductase 3; P5CR 3; PCA reductase 3; EC 1.5.1.2 from Bacillus subtilis

26% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory