Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 33 curated entries in PaperBLAST's database that match '1.5.1.2' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

proC AMB_RS02820 amb0545 WP_011382988.1: pyrroline-5-carboxylate reductase
is similar to:		 PaperBLAST

CCNA_00528: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Caulobacter crescentus

 43% id,
100% cov

P5CR_PSEAE / P22008: Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 from Pseudomonas aeruginosa

 39% id,
97% cov

O87725: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Acetoanaerobium sticklandii

 35% id,
99% cov

More...

panE AMB_RS10015 amb1986 WP_011384389.1: 2-dehydropantoate 2-reductase
is similar to:		 PaperBLAST

DvMF_3161: pyrroline-5-carboxylate reductase (EC 1.5.1.2) from Desulfovibrio vulgaris

 31% id,
32% cov

AMB_RS20090 amb3970 WP_011386324.1: cache domain-containing protein
is similar to:		 PaperBLAST

P5CR3_BACSU / Q00777: Pyrroline-5-carboxylate reductase 3; P5C reductase 3; P5CR 3; PCA reductase 3; EC 1.5.1.2 from Bacillus subtilis

 26% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory