Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS01610 amb0317 WP_011382764.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti

58% id,
99% cov

OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa

53% id,
96% cov

OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi

51% id,
97% cov

More...

AMB_RS18300 WP_043745147.1: aspartate carbamoyltransferase
is similar to:
PaperBLAST

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

31% id,
95% cov

OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis
OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis
P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis
P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis

30% id,
99% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

31% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory