Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 3 curated entries in PaperBLAST's database that match '2.1.3.9' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

argF AMB_RS01610 amb0317 WP_011382764.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

35% id,
97% cov

AMB_RS18300 amb3615 WP_043745147.1: aspartate carbamoyltransferase catalytic subunit
is similar to:
PaperBLAST

AOTC_XANCP / Q8P8J2: N-acetylornithine carbamoyltransferase; N-acetyl-L-ornithine transcarbamylase; AOTCase; Acetylornithine transcarbamylase; EC 2.1.3.9 from Xanthomonas campestris
argF' / Q8P8J2: acetylornithine transcarbamylase subunit (EC 2.1.3.9) from Xanthomonas campestris
Q8P8J2: N-acetylornithine carbamoyltransferase (EC 2.1.3.9) from Xanthomonas campestris

23% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory