Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS18210 amb3598 WP_043745132.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

71% id,
99% cov

PfGW456L13_2982: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Pseudomonas fluorescens

70% id,
99% cov

Ac3H11_2994: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Acidovorax sp.

67% id,
98% cov

More...

pcaF AMB_RS13850 amb2754 WP_011385133.1: 3-oxoadipyl-CoA thiolase
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

67% id,
100% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli
atoB / P76461: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Escherichia coli

48% id,
100% cov

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

48% id,
100% cov

More...

AMB_RS04295 amb0842 WP_011383284.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

phaA / Q3IZW1: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Cereibacter sphaeroides

65% id,
100% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

64% id,
100% cov

PGA1_c03400: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Phaeobacter inhibens

62% id,
100% cov

More...

AMB_RS13060 amb2595 WP_011384976.1: 3-oxoadipyl-CoA thiolase
is similar to:
PaperBLAST

pcaF / Q51956: subunit of β-ketoadipyl CoA thiolase (EC 2.3.1.174; EC 2.3.1.16) from Pseudomonas putida

56% id,
100% cov

phbA / P14611: acetyl-CoA acetyltransferase subunit (EC 2.3.1.16) from Cupriavidus necator

44% id,
100% cov

PS417_10515 / A0A1N7U0F8: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Pseudomonas simiae

43% id,
100% cov

More...

AMB_RS15045 amb2989 WP_011385365.1: thiolase family protein
is similar to:
PaperBLAST

encJ / Q9KHK9: 3-oxo-3-phenylpropionyl-CoA thiolase (EC 2.3.1.16) from Streptomyces maritimus

43% id,
98% cov

AtoB / b2224: acetyl-CoA acetyltransferase (EC 2.3.1.16; EC 2.3.1.9) from Escherichia coli
atoB / P76461: acetyl-CoA acetyltransferase (EC 2.3.1.16) from Escherichia coli

27% id,
96% cov

THIK5_ARATH / Q570C8: 3-ketoacyl-CoA thiolase 5, peroxisomal; Acetyl-CoA acyltransferase 5; Beta-ketothiolase 5; Peroxisomal 3-oxoacyl-CoA thiolase 5; EC 2.3.1.16 from Arabidopsis thaliana

24% id,
82% cov

More...

AMB_RS15050 amb2990 WP_011385366.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

30% id,
94% cov

AMB_RS19750 amb3902 WP_011386256.1: 3-hydroxybutyryl-CoA dehydrogenase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

34% id,
37% cov

AMB_RS13065 amb2596 WP_011384977.1: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
37% cov

AMB_RS03265 amb0634 WP_011383077.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

33% id,
35% cov

AMB_RS13070 amb2597 WP_011384978.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

32% id,
33% cov

AMB_RS20905 amb4133 WP_011386482.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

30% id,
29% cov

AMB_RS13040 amb2591 WP_011384972.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

34% id,
24% cov

paaG AMB_RS00905 amb0178 WP_011382625.1: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

29% id,
25% cov

boxC AMB_RS00885 amb0174 WP_011382621.1: 2,3-epoxybenzoyl-CoA dihydrolase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

28% id,
26% cov

AMB_RS06685 amb1315 WP_011383725.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

30% id,
23% cov

AMB_RS10825 amb2142 WP_011384541.1: cyclohexa-1,5-dienecarbonyl-CoA hydratase
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

27% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3223902-3226691 (frame +3) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

29% id,
98% cov

199493-201280 (frame +2) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

28% id,
29% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory