Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 57 curated entries in PaperBLAST's database that match '2.3.1.29'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS08510 amb1683 WP_011384092.1: 5-aminolevulinate synthase
is similar to:
PaperBLAST

BIKB_THET8 / Q5SHZ8: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; Glycine acetyltransferase; EC 2.3.1.29; EC 2.3.1.47 from Thermus thermophilus

40% id,
98% cov

KBL_ECOLI / P0AB77: 2-amino-3-ketobutyrate coenzyme A ligase; AKB ligase; Glycine acetyltransferase; EC 2.3.1.29 from Escherichia coli
Kbl / b3617: 2-amino-3-ketobutyrate CoA ligase (EC 2.3.1.29) from Escherichia coli
kbl: 2-amino-3-ketobutyrate coenzyme A ligase; EC 2.3.1.29 from Escherichia coli
kbl / P0AB77: 2-amino-3-ketobutyrate CoA ligase (EC 2.3.1.29) from Escherichia coli
P0AB77: glycine C-acetyltransferase (EC 2.3.1.29) from Escherichia coli

33% id,
99% cov

RR42_RS28295: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Cupriavidus basilensis

36% id,
90% cov

More...

AMB_RS13875 amb2759 WP_011385138.1: 8-amino-7-oxononanoate synthase
is similar to:
PaperBLAST

BIKB_THET8 / Q5SHZ8: 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; Glycine acetyltransferase; EC 2.3.1.29; EC 2.3.1.47 from Thermus thermophilus

40% id,
91% cov

KBL_HUMAN / O75600: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial; AKB ligase; Aminoacetone synthase; Glycine acetyltransferase; EC 2.3.1.29 from Homo sapiens
GCAT / O75600: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) from Homo sapiens

37% id,
90% cov

KBL_BOVIN / Q0P5L8: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial; AKB ligase; Aminoacetone synthase; Glycine acetyltransferase; EC 2.3.1.29 from Bos taurus

36% id,
90% cov

More...

AMB_RS10635 amb2108 WP_043744173.1: beta-ketoacyl-[acyl-carrier-protein] synthase II
is similar to:
PaperBLAST

KASA_MYCTE / H8ESN0: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; EC 2.3.1.293 from Mycobacterium tuberculosis
KASA_MYCTU / P9WQD9: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; Beta-ketoacyl-acyl carrier protein synthase KasA; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I; EC 2.3.1.293 from Mycobacterium tuberculosis
kasA / P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I monomer (EC 2.3.1.41; EC 2.3.1.179; EC 2.3.1.293) from Mycobacterium tuberculosis

38% id,
97% cov

KASB_MYCTU / P9WQD7: 3-oxoacyl-[acyl-carrier-protein] synthase 2; Beta-ketoacyl-ACP synthase 2; KAS 2; Beta-ketoacyl-acyl carrier protein synthase KasB; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II; EC 2.3.1.294 from Mycobacterium tuberculosis
kasB / P9WQD7: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II (EC 2.3.1.294) from Mycobacterium tuberculosis

36% id,
97% cov

PPSB_MYCTU / P9WQE5: Phenolphthiocerol/phthiocerol polyketide synthase subunit B; (Phenol)carboxyphthiodiolenone synthase subunit B; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsB; EC 2.3.1.292 from Mycobacterium tuberculosis

29% id,
23% cov

More...

AMB_RS09835 amb1949 WP_011384352.1: KR domain-containing protein
is similar to:
PaperBLAST

PPSD_MYCBO / Q7TXL7: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit D; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsD; EC 2.3.1.292 from Mycobacterium bovis

30% id,
99% cov

PPSD_MYCTU / P9WQE3: Phenolphthiocerol/phthiocerol polyketide synthase subunit D; (Phenol)carboxyphthiodiolenone synthase subunit D; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsD; EC 2.3.1.292 from Mycobacterium tuberculosis

30% id,
99% cov

KASB_MYCTU / P9WQD7: 3-oxoacyl-[acyl-carrier-protein] synthase 2; Beta-ketoacyl-ACP synthase 2; KAS 2; Beta-ketoacyl-acyl carrier protein synthase KasB; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II; EC 2.3.1.294 from Mycobacterium tuberculosis
kasB / P9WQD7: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase II (EC 2.3.1.294) from Mycobacterium tuberculosis

27% id,
96% cov

More...

AMB_RS13480 amb2679 WP_011385059.1: NAD(P)H quinone oxidoreductase
is similar to:
PaperBLAST

PPSC_MYCBO / Q7TXL8: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium bovis
PPSC_MYCTU / P96202: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium tuberculosis

32% id,
15% cov

AMB_RS23050 amb4555 WP_011386899.1: quinone oxidoreductase
is similar to:
PaperBLAST

PPSC_MYCBO / Q7TXL8: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium bovis
PPSC_MYCTU / P96202: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium tuberculosis

30% id,
15% cov

AMB_RS03860 amb0752 WP_011383195.1: NADPH:quinone oxidoreductase family protein
is similar to:
PaperBLAST

PPSC_MYCBO / Q7TXL8: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium bovis
PPSC_MYCTU / P96202: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit C; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsC; EC 2.3.1.292 from Mycobacterium tuberculosis

31% id,
14% cov

PKS12_MYCTU / I6XD69: Mycoketide-CoA synthase; Polyketide synthase Pks12; EC 2.3.1.295 from Mycobacterium tuberculosis
pks12 / I6XD69: mycoketide-CoA synthase monomer (EC 2.3.1.295) from Mycobacterium tuberculosis

32% id,
7% cov

AMB_RS07830 amb1550 WP_011383960.1: NADP-dependent oxidoreductase
is similar to:
PaperBLAST

PKS12_MYCTU / I6XD69: Mycoketide-CoA synthase; Polyketide synthase Pks12; EC 2.3.1.295 from Mycobacterium tuberculosis
pks12 / I6XD69: mycoketide-CoA synthase monomer (EC 2.3.1.295) from Mycobacterium tuberculosis

31% id,
7% cov

AMB_RS10620 amb2105 WP_011384505.1: [acyl-carrier-protein] S-malonyltransferase
is similar to:
PaperBLAST

PKS12_MYCTU / I6XD69: Mycoketide-CoA synthase; Polyketide synthase Pks12; EC 2.3.1.295 from Mycobacterium tuberculosis
pks12 / I6XD69: mycoketide-CoA synthase monomer (EC 2.3.1.295) from Mycobacterium tuberculosis

28% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2281355-2282686 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

KASA_MYCTE / H8ESN0: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; EC 2.3.1.293 from Mycobacterium tuberculosis
KASA_MYCTU / P9WQD9: 3-oxoacyl-[acyl-carrier-protein] synthase 1; Beta-ketoacyl-ACP synthase 1; KAS 1; Beta-ketoacyl-acyl carrier protein synthase KasA; Meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I; EC 2.3.1.293 from Mycobacterium tuberculosis
kasA / P9WQD9: meromycolic acid 3-oxoacyl-(acyl carrier protein) synthase I monomer (EC 2.3.1.41; EC 2.3.1.179; EC 2.3.1.293) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

37% id,
100% cov

PPSA_MYCTU / P9WQE7: Phenolphthiocerol/phthiocerol polyketide synthase subunit A; (Phenol)carboxyphthiodiolenone synthase subunit A; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsA; EC 2.3.1.292 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

28% id,
24% cov

PPSA_MYCBO / Q7TXM0: Phenolphthiocerol/phthiocerol polyketide synthase subunit A; (Phenol)carboxyphthiodiolenone synthase subunit A; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsA; EC 2.3.1.292 from Mycobacterium bovis
Also see hits to annotated proteins above

28% id,
24% cov

More...

2097839-2104240 (frame +2) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

PPSD_MYCTU / P9WQE3: Phenolphthiocerol/phthiocerol polyketide synthase subunit D; (Phenol)carboxyphthiodiolenone synthase subunit D; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsD; EC 2.3.1.292 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

30% id,
100% cov

PPSD_MYCBO / Q7TXL7: Phenolphthiocerol/phthiocerol polyketide synthase subunit C; (Phenol)carboxyphthiodiolenone synthase subunit D; Beta-ketoacyl-acyl-carrier-protein synthase I; Phthiocerol synthesis polyketide synthase type I PpsD; EC 2.3.1.292 from Mycobacterium bovis
Also see hits to annotated proteins above

30% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory