Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 38 curated entries in PaperBLAST's database that match '2.3.3.13' as complete word(s).

These curated entries have 31 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS17765 amb3512 WP_043745065.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU1_NEIMB / Q9JZG1: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Neisseria meningitidis
Q9JZG1: 2-isopropylmalate synthase (EC 2.3.3.13) from Neisseria meningitidis

58% id,
99% cov

LEU11_LEPIN / Q8F445: 2-isopropylmalate synthase 1; Alpha-IPM synthase 1; Alpha-isopropylmalate synthase 1; EC 2.3.3.13 from Leptospira interrogans

55% id,
99% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

51% id,
99% cov

More...

leuA AMB_RS17550 amb3468 WP_011385828.1: 2-isopropylmalate synthase
is similar to:
PaperBLAST

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum

55% id,
90% cov

LEU1_MYCTO / P9WQB2: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
LEU1_MYCTU / P9WQB3: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis

55% id,
87% cov

LEU9_YEAST / Q12166: 2-isopropylmalate synthase 2, mitochondrial; Alpha-IPM synthase 2; Alpha-isopropylmalate synthase 2; Alpha-isopropylmalate synthase II; EC 2.3.3.13 from Saccharomyces cerevisiae

48% id,
93% cov

More...

nifV AMB_RS07875 amb1562 WP_011383972.1: homocitrate synthase
is similar to:
PaperBLAST

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

39% id,
92% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

31% id,
99% cov

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

34% id,
90% cov

More...

cimA AMB_RS10755 amb2130 WP_011384529.1: citramalate synthase
is similar to:
PaperBLAST

CA265_RS15855: 2-isopropylmalate synthase (EC 2.3.3.13) from Pedobacter sp.

31% id,
96% cov

LEU1_SULAC / Q4JA78: 2-isopropylmalate synthase; IPMS; Alpha-isopropylmalate synthase; Alpha-IPM synthase; EC 2.3.3.13 from Sulfolobus acidocaldarius

31% id,
91% cov

Echvi_3833: 2-isopropylmalate synthase (EC 2.3.3.13) from Echinicola vietnamensis

31% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3809344-3811104 (frame -1) on NC_007626.1 Paramagnetospirillum magneticum AMB-1, complete sequence
is similar to:
PaperBLAST

LEU1_CORGL / P42455: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Corynebacterium glutamicum
Also see hits to annotated proteins above

53% id,
96% cov

LEU1_MYCTO / P9WQB2: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
LEU1_MYCTU / P9WQB3: 2-isopropylmalate synthase; Alpha-IPM synthase; Alpha-isopropylmalate synthase; EC 2.3.3.13 from Mycobacterium tuberculosis
P9WQB3: 2-isopropylmalate synthase (EC 2.3.3.13) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

54% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory