Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

nifV AMB_RS07875 amb1562 WP_011383972.1: homocitrate synthase
is similar to:		 PaperBLAST

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 55% id,
95% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 58% id,
88% cov

A0A1Y6KBA1: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 58% id,
85% cov

More...

AMB_RS17765 amb3512 WP_043745065.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 46% id,
95% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 39% id,
98% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 40% id,
93% cov

More...

cimA AMB_RS10755 amb2130 WP_011384529.1: citramalate synthase
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 30% id,
99% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 30% id,
97% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 30% id,
92% cov

More...

leuA AMB_RS17550 amb3468 WP_011385828.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 26% id,
90% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 25% id,
93% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 27% id,
85% cov

More...

AMB_RS03460 amb0673 WP_011383116.1: hydroxymethylglutaryl-CoA lyase
is similar to:		 PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

 24% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory