Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS20840 amb4121 WP_011386470.1: S-methyl-5'-thioadenosine phosphorylase
is similar to:
PaperBLAST

MTAP_RHORT / Q2RXH9: S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; EC 2.4.2.28 from Rhodospirillum rubrum

70% id,
100% cov

C6KFA4: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from uncultured bacterium

48% id,
94% cov

MTAP_SACS2 / Q97W94: S-methyl-5'-thioadenosine phosphorylase; 5'-methylthioadenosine phosphorylase; MTA phosphorylase; MTAP; MTAPII; EC 2.4.2.28 from Saccharolobus solfataricus
Q97W94: purine-nucleoside phosphorylase (EC 2.4.2.1); S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Saccharolobus solfataricus

44% id,
100% cov

More...

AMB_RS03090 amb0599 WP_011383042.1: tRNA guanosine(34) transglycosylase Tgt
is similar to:
PaperBLAST

TGT_ZYMMO / P28720: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Zymomonas mobilis
P28720: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Zymomonas mobilis

63% id,
95% cov

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

55% id,
99% cov

Q54177: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Shigella flexneri

55% id,
99% cov

More...

AMB_RS02805 WP_043743274.1: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
is similar to:
PaperBLAST

cobU / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp.
P29935: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Pseudomonas denitrificans

56% id,
100% cov

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

41% id,
93% cov

cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum

38% id,
92% cov

More...

AMB_RS21790 amb4308 WP_011386656.1: xanthine phosphoribosyltransferase
is similar to:
PaperBLAST

XGPT_ECOLI / P0A9M5: Xanthine-guanine phosphoribosyltransferase; XGPRT; Xanthine phosphoribosyltransferase; EC 2.4.2.-; EC 2.4.2.22 from Escherichia coli
Gxu / b0238: xanthine-guanine phsophoribosyltransferase (EC 2.4.2.8; EC 2.4.2.22) from Escherichia coli
gpt / GB|AAN41945.1: xanthine phosphoribosyltransferase; EC 2.4.2.22 from Shigella sonnei
gpt / P0A9M5: xanthine-guanine phsophoribosyltransferase (EC 2.4.2.8; EC 2.4.2.22) from Escherichia coli

54% id,
88% cov

AMB_RS03060 amb0593 WP_011383036.1: peptidoglycan editing factor PgeF
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

38% id,
91% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

33% id,
97% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

33% id,
94% cov

More...

AMB_RS06230 amb1227 WP_011383639.1: 5,6-dimethylbenzimidazole synthase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

40% id,
37% cov

AMB_RS20745 amb4103 WP_043745446.1: DNA polymerase III subunit gamma/tau
is similar to:
PaperBLAST

XYLT1_HUMAN / Q86Y38: Xylosyltransferase 1; Peptide O-xylosyltransferase 1; Xylosyltransferase I; XT-I; XylT-I; EC 2.4.2.26 from Homo sapiens
CAD62248.1: peptide O-β-xylosyltransferase I (XT-I;XylT1;XYLT1) (EC 2.4.2.26) from
XYLT1 / Q86Y38: xylosyltransferase 1 (EC 2.4.2.26) from Homo sapiens
Q86Y38: protein xylosyltransferase (EC 2.4.2.26) from Homo sapiens

33% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1303520-1304302 (frame -3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii
Also see hits to annotated proteins above

38% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory