Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 65 curated entries in PaperBLAST's database that match '2.4.2.4'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS20840 amb4121 WP_011386470.1: S-methyl-5'-thioadenosine phosphorylase
is similar to:
PaperBLAST

MTIP_PSEAE / Q9HZK1: S-methyl-5'-thioinosine phosphorylase; 5'-methylthioinosine phosphorylase; MTI phosphorylase; MTIP; EC 2.4.2.44 from Pseudomonas aeruginosa
PA3004 / Q9HZK1: S-methyl-5'-thioinosine phosphorylase monomer (EC 2.4.2.44) from Pseudomonas aeruginosa
Q9HZK1: S-methyl-5'-thioinosine phosphorylase (EC 2.4.2.44) from Pseudomonas aeruginosa

37% id,
84% cov

AMB_RS01330 amb0262 WP_043743104.1: glycosyltransferase family 39 protein
is similar to:
PaperBLAST

ARNT_SALTY / O52327: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Polymyxin resistance protein PmrK; Undecaprenyl phosphate-alpha-L-Ara4N transferase; EC 2.4.2.43 from Salmonella typhimurium
O52327: lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase (EC 2.4.2.43) from Salmonella enterica

24% id,
87% cov

AAL34393.1: 4-amino-4-deoxy-L-arabinotransferase (ArnT) (EC 2.4.2.43) from

24% id,
86% cov

AMB_RS03090 amb0599 WP_011383042.1: tRNA guanosine(34) transglycosylase Tgt
is similar to:
PaperBLAST

Q8THU2: tRNA-guanosine34 transglycosylase (subunit 2/2) (EC 2.4.2.29); tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Methanosarcina acetivorans

29% id,
66% cov

ATGT_HALVD / Q9C4M3: tRNA-guanine(15) transglycosylase; 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Archaeal tRNA-guanine transglycosylase; EC 2.4.2.48 from Haloferax volcanii
Q9C4M3: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Haloferax volcanii

28% id,
64% cov

Q9HI54: tRNA-guanine15 transglycosylase (EC 2.4.2.48) from Thermoplasma acidophilum

27% id,
51% cov

More...

AMB_RS09155 amb1809 WP_083763488.1: divergent polysaccharide deacetylase family protein
is similar to:
PaperBLAST

GXLT2_HUMAN / A0PJZ3: Glucoside xylosyltransferase 2; Glycosyltransferase 8 domain-containing protein 4; EC 2.4.2.42 from Homo sapiens

30% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4315598-4316152 (frame -3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

GXLT2_HUMAN / A0PJZ3: Glucoside xylosyltransferase 2; Glycosyltransferase 8 domain-containing protein 4; EC 2.4.2.42 from Homo sapiens
Also see hits to annotated proteins above

36% id,
21% cov

92947-93141 (frame -1) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

AFTD_MYCS2 / A0QPD4: Alpha-(1->3)-arabinofuranosyltransferase; Arabinofuranan 3-O-arabinosyltransferase; EC 2.4.2.47 from Mycolicibacterium smegmatis

55% id,
2% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory