Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 3 curated entries in PaperBLAST's database that match '2.6.1.113'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS08515 amb1684 WP_011384093.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

45% id,
98% cov

AMB_RS13895 amb2763 WP_011385142.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
94% cov

AMB_RS04150 amb0812 WP_011383255.1: acetylornithine transaminase
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

29% id,
93% cov

AMB_RS01605 amb0316 WP_083763404.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

SPUC_PSEAE / Q9I6J2: Putrescine--pyruvate aminotransferase; PATase; Putrescine--pyruvate transaminase; EC 2.6.1.113 from Pseudomonas aeruginosa
spuC / Q9I6J2: putrescine--pyruvate aminotransferase (EC 2.6.1.113) from Pseudomonas aeruginosa
Q9I6J2: putrescine-pyruvate transaminase (EC 2.6.1.113) from Pseudomonas aeruginosa

30% id,
90% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory