Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 31 curated entries in PaperBLAST's database that match '2.6.1.52' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS16135 amb3194 WP_011385559.1: phosphoserine transaminase
is similar to:
PaperBLAST

serC / Q8TNI1: phosphoserine aminotransferase monomer (EC 2.6.1.52; EC 2.6.1.1) from Methanosarcina acetivorans

62% id,
100% cov

SERC_METBF / P52878: Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Methanosarcina barkeri
P52878: phosphoserine transaminase (EC 2.6.1.52) from Methanosarcina barkeri

61% id,
100% cov

AMB_RS22510 amb4448 WP_011386792.1: alanine--glyoxylate aminotransferase family protein
is similar to:
PaperBLAST

serC / P74281: serine—glyoxylate transaminase (EC 2.6.1.52) from Synechocystis sp.
P74281: phosphoserine transaminase (EC 2.6.1.52) from Synechocystis sp.

37% id,
98% cov

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

36% id,
93% cov

AMB_RS12385 amb2464 WP_011384845.1: alanine--glyoxylate aminotransferase family protein
is similar to:
PaperBLAST

serC / Q58369: phosphoserine aminotransferase monomer (EC 2.6.1.1; EC 2.6.1.52) from Methanocaldococcus jannaschii

32% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory