Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 7 curated entries in PaperBLAST's database that match '2.6.1.78' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS02875 amb0555 WP_011382998.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

68% id,
100% cov

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

46% id,
99% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

44% id,
97% cov

More...

AMB_RS07030 amb1390 WP_043743690.1: 1-aminocyclopropane-1-carboxylate deaminase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

32% id,
97% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

29% id,
94% cov

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

27% id,
99% cov

More...

AMB_RS18860 amb3727 WP_011386083.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

32% id,
98% cov

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

31% id,
98% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

31% id,
93% cov

More...

AMB_RS03565 amb0694 WP_043743334.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

31% id,
91% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

28% id,
93% cov

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

28% id,
92% cov

More...

AMB_RS04060 amb0794 WP_011383237.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus
Q56232: aspartate-prephenate aminotransferase (EC 2.6.1.78) from Thermus thermophilus

29% id,
97% cov

Q02635: aspartate transaminase (EC 2.6.1.1); aspartate-prephenate aminotransferase (EC 2.6.1.78); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti

26% id,
94% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

27% id,
92% cov

More...

AMB_RS20110 amb3974 WP_011386328.1: histidinol-phosphate aminotransferase
is similar to:
PaperBLAST

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

25% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory