Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 16 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS19870 amb3926 WP_050750826.1: shikimate kinase
is similar to:
PaperBLAST

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

26% id,
96% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

31% id,
72% cov

GntV / b4268: D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli
idnK / GB|AAC77225.1: gluconokinase; EC 2.7.1.12 from Escherichia coli
idnK / P39208: D-gluconate kinase, thermosensitive (EC 2.7.1.12) from Escherichia coli

28% id,
36% cov

AMB_RS05230 amb1021 WP_011383440.1: protein kinase family protein
is similar to:
PaperBLAST

Q29502: gluconokinase (EC 2.7.1.12) from Oryctolagus cuniculus

27% id,
39% cov

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus

28% id,
37% cov

AMB_RS04555 amb0894 WP_083763591.1: TRAP transporter small permease
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

29% id,
28% cov

AMB_RS05265 amb1029 WP_011383447.1: serine/threonine protein kinase
is similar to:
PaperBLAST

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus

28% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

953990-954772 (frame -3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri
Also see hits to annotated proteins above

27% id,
34% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory