Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 146 curated entries in PaperBLAST's database that match '2.7.1.15'.

These curated entries have 91 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS22385 amb4425 WP_011386770.1: bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
is similar to:
PaperBLAST

cobP / P29931: CobP (EC 2.7.1.156; EC 2.7.7.62) from Sinorhizobium sp.

54% id,
95% cov

COBU_SALTY / Q05599: Bifunctional adenosylcobalamin biosynthesis protein CobU; Adenosylcobinamide kinase; Adenosylcobinamide-phosphate guanylyltransferase; EC 2.7.1.156; EC 2.7.7.62 from Salmonella typhimurium
cobU / Q05599: adenosylcobinamide-phosphate guanylyltransferase subunit (EC 2.7.1.156; EC 2.7.7.62) from Salmonella typhimurium

44% id,
98% cov

CobU / b1993: cobinamide-P guanylyltransferase / cobinamide kinase (EC 2.7.7.62; EC 2.7.1.156) from Escherichia coli
cobU / RF|NP_416497: bifunctional adenosylcobalamin biosynthesis protein CobU; EC 2.7.1.156; EC 2.7.7.62 from Escherichia coli

42% id,
98% cov

AMB_RS16380 WP_083763540.1: carbohydrate kinase family protein
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

31% id,
97% cov

Q8NQR0: ribokinase (EC 2.7.1.15) from Corynebacterium glutamicum

30% id,
97% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

30% id,
94% cov

More...

AMB_RS21170 amb4184 WP_011386533.1: adenosine kinase
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

26% id,
82% cov

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

25% id,
79% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

25% id,
78% cov

More...

AMB_RS03985 amb0778 WP_011383221.1: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

25% id,
79% cov

RBSK_HUMAN / Q9H477: Ribokinase; RK; EC 2.7.1.15 from Homo sapiens
Q9H477: ribokinase (EC 2.7.1.15) from Homo sapiens

23% id,
84% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

29% id,
23% cov

AMB_RS00315 amb0062 WP_011382509.1: cytidyltransferase
is similar to:
PaperBLAST

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

25% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4599416-4600864 (frame -3) on NC_007626.1 Magnetospirillum magneticum AMB-1 DNA, complete genome
is similar to:
PaperBLAST

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
Also see hits to annotated proteins above

25% id,
87% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory