Curated BLAST for Genomes


Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 28 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS12860 amb2554 WP_011384935.1: acetate/propionate family kinase
is similar to:

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC from Thermotoga maritima
Q9WYB1: acetate kinase (EC from Thermotoga maritima

40% id,
99% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC from Bacillus subtilis

40% id,
99% cov

ACKA_METTE / P38502: Acetate kinase; Acetokinase; EC from Methanosarcina thermophila
P38502: acetate kinase (EC from Methanosarcina thermophila

39% id,
97% cov


AMB_RS11140 amb2201 WP_011384599.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli

27% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory