Curated BLAST for Genomes

 

Curated BLAST

Searching in Magnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Magnetospirillum magneticum AMB-1, or try another query

AMB_RS08365 amb1653 WP_011383259.1: CoA transferase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

68% id,
100% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

67% id,
100% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

55% id,
95% cov

More...

AMB_RS07510 amb1487 WP_011383897.1: CoA transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

65% id,
100% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

65% id,
100% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

56% id,
95% cov

More...

AMB_RS13130 amb2609 WP_043744516.1: CoA transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

61% id,
100% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

60% id,
100% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

51% id,
97% cov

More...

AMB_RS10775 amb2133 WP_011384532.1: CoA transferase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

36% id,
99% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

36% id,
99% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

36% id,
98% cov

More...

AMB_RS03640 amb0709 WP_011383152.1: CoA transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

31% id,
91% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

30% id,
91% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

28% id,
93% cov

More...

AMB_RS03710 amb0722 WP_011383165.1: acyl-CoA transferase/carnitine dehydratase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

27% id,
68% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

32% id,
51% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

30% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory