Curated BLAST for Genomes

 

Curated BLAST

Searching in Paramagnetospirillum magneticum AMB-1 (GCF_000009985.1)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.108' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paramagnetospirillum magneticum AMB-1, or try another query

AMB_RS01115 amb0219 WP_011382666.1: GH1 family beta-glucosidase
is similar to:		 PaperBLAST

AAQ79765.1: lactase phlorizin hydrolase (LCT;LPH) (EC 3.2.1.108|3.2.1.62)

 37% id,
98% cov

AAQ79765.1: lactase phlorizin hydrolase (LCT;LPH) (EC 3.2.1.108|3.2.1.62)

 52% id,
38% cov

LPH_RAT / Q02401: Lactase/phlorizin hydrolase; Lactase/glycosylceramidase; EC 3.2.1.108; EC 3.2.1.62 from Rattus norvegicus
Q02401: lactase (EC 3.2.1.108); phloretin hydrolase (EC 3.7.1.4) from Rattus norvegicus

 32% id,
24% cov

More...

AMB_RS11280 amb2230 WP_050750700.1: GH1 family beta-glucosidase
is similar to:		 PaperBLAST

AAQ79765.1: lactase phlorizin hydrolase (LCT;LPH) (EC 3.2.1.108|3.2.1.62)

 35% id,
97% cov

LPH_RAT / Q02401: Lactase/phlorizin hydrolase; Lactase/glycosylceramidase; EC 3.2.1.108; EC 3.2.1.62 from Rattus norvegicus
Q02401: lactase (EC 3.2.1.108); phloretin hydrolase (EC 3.7.1.4) from Rattus norvegicus

 36% id,
24% cov

LPH_HUMAN / P09848: Lactase/phlorizin hydrolase; Lactase/glycosylceramidase; EC 3.2.1.108; EC 3.2.1.62 from Homo sapiens
LCT / P09848: lactase-phlorizin hydrolase subunit (EC 3.2.1.62; EC 3.2.1.108) from Homo sapiens
P09848: lactase (EC 3.2.1.108); glycosylceramidase (EC 3.2.1.62); phloretin hydrolase (EC 3.7.1.4) from Homo sapiens

 35% id,
24% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory